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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6795517_6796318_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6795517 - 6796318
Intron Length:
802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTAAAA
5'SS Class:
major
3'SS Sequence:
GCATTTTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAA
U12 Branch Point Sequence:
TTTGTCTAAACC
Flanking Amino Acid:
CRRLIKGSADRNSPSPSSVA
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
69.7
36.3
Major BPS
67.6
0.44
1.2
69.9
35.3
Major PPT
78.7
0.65
0.9
72.4
37.6
Minor 5ss
31.5
-2.1
3.1
39.8
45.8
Minor BPS
65.2
0.46
1.8
77.35
39.1

Associated Gene:

Gene:
IFFO2
Ensembl Gene ID:
ENSAPLG00000011713
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012226
6759399 - 6796424
37026