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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_683174_685201_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
683174 - 685201
Intron Length:
2028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
AAGGAGTTATTT
Flanking Amino Acid:
VLLLRESSHAGAMRNDAAAS
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
39.1
-0.7
2.3
51.98
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008702
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009079
683101 - 691119
8019