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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_687737_688432_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
687737 - 688432
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAACA
5'SS Class:
major
3'SS Sequence:
CATTTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TATCCCATCATT
Flanking Amino Acid:
LTCFCLFLVARLSPCEWNEP
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
69.4
34.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
75.9
0.58
0.8
69.3
31.1
Minor 5ss
39.2
-1.2
2.9
50
46
Minor BPS
51.7
0.13
2
75.87
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008702
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009079
683101 - 691119
8019
ENSAPLT00000045915
683101 - 691119
8019