Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6891460_6938823_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6891460 - 6938823

Intron Length:

47364

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAGAGGC

5'SS Class:

major

3'SS Sequence:

CTTTCCTACCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TCTTTCCTACCC

Flanking Amino Acid:

HSIDGILGDKGNRLDEGSDV

Intron Amino Acid Position:

194

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.64

1.1

65.4

39.1

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

76.9

0.6

0.8

69.6

35.7

Minor 5ss

27.1

-2.6

3.1

33.9

41.5

Minor BPS

54.4

0.12

70.2

41.5

Associated Gene:

Gene:

PAX7

Ensembl Gene ID:

ENSAPLG00000005016

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042928

6837489 - 6943109

105621