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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6891460_6939951_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6891460 - 6939951
Intron Length:
48492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTTTCCTACCC
Flanking Amino Acid:
GHCDRSTVPSGNRLDEGSDV
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
71.5
40.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
76.9
0.6
0.8
69.6
35.7
Minor 5ss
27.4
-2.6
2.7
31.3
42.4
Minor BPS
54.4
0.12
2
70.2
41.5

Associated Gene:

Gene:
PAX7
Ensembl Gene ID:
ENSAPLG00000005016
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005247
6837489 - 6943109
105621