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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6938953_6939951_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6938953 - 6939951
Intron Length:
999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
GTCTGAGGTTTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTATAT
U12 Branch Point Sequence:
TTGTCTTTGACT
Flanking Amino Acid:
GHCDRSTVPSVSSISRVLRI
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
71.5
40.2
Major BPS
66.9
0.42
1.1
64.7
41.3
Major PPT
58.3
0.19
1.1
54.6
44.9
Minor 5ss
27.4
-2.6
2.7
31.3
42.4
Minor BPS
81.5
1.07
1
90.81
33.2

Associated Gene:

Gene:
PAX7
Ensembl Gene ID:
ENSAPLG00000005016
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042928
6837489 - 6943109
105621