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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6940082_6940724_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6940082 - 6940724
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTGACCACAAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATTGAC
U12 Branch Point Sequence:
TGGCCATTGACC
Flanking Amino Acid:
PGAIGGSKPRQVATPDVEKK
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.1
34.7
Major BPS
66.4
0.41
1
58.7
38.1
Major PPT
51.1
0.02
1.1
50.9
37
Minor 5ss
27.1
-2.6
2.9
24.2
36.8
Minor BPS
56.7
0.19
1.7
65.67
39.7

Associated Gene:

Gene:
PAX7
Ensembl Gene ID:
ENSAPLG00000005016
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042928
6837489 - 6943109
105621
ENSAPLT00000005247
6837489 - 6943109
105621