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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_694429_694880_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
694429 - 694880
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTGCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
AATCAGTGAACT
Flanking Amino Acid:
VRELLSRGTEVILACNSGPA
Intron Amino Acid Position:
645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
75.5
0.57
0.9
73.3
36.5
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
45.8
-0.2
2.2
67.71
42

Associated Gene:

Gene:
PANK4
Ensembl Gene ID:
ENSAPLG00000008017
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029018
691942 - 714768
22827
ENSAPLT00000023110
691502 - 714768
23267
ENSAPLT00000008369
691014 - 714768
23755