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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6954270_6954645_F

Intron Information:

Intron Rank:
149123
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
6954270 - 6954645
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGCACAAC
5'SS Class:
weak_major
3'SS Sequence:
TAAATATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
CTATACTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.3
0.22
1.1
54.6
38.4
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
73.7
0.53
1
66.6
43.5
Minor 5ss
32.7
-2
3.2
38.9
41.8
Minor BPS
65.9
0.58
1.7
79.5
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030181
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046108
6953998 - 6955478
1481