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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_696465_697028_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
696465 - 697028
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGGGG
5'SS Class:
major
3'SS Sequence:
CTTTGTGACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TTCTTTGTGACA
Flanking Amino Acid:
GFEEAKSKLQERPWLEDSYS
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.1
52.2
44.9
Major BPS
75.8
0.64
1
65.8
41
Major PPT
70.3
0.46
1
64.6
40.6
Minor 5ss
26.9
-2.7
3.7
37.8
47
Minor BPS
52.1
0.06
2
68.85
38.3

Associated Gene:

Gene:
PANK4
Ensembl Gene ID:
ENSAPLG00000008017
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029018
691942 - 714768
22827
ENSAPLT00000023110
691502 - 714768
23267
ENSAPLT00000008369
691014 - 714768
23755