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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6970153_6970443_R

Intron Information:

Intron Rank:
144407
Intron Class:
major
Intron Phase:
Intron Coordinates:
6970153 - 6970443
Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTGGC
5'SS Class:
major
3'SS Sequence:
TTATTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65
39.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
91.3
0.93
0.7
84.8
35.6
Minor 5ss
39.3
-1.2
3.1
49.2
42.4
Minor BPS
59.3
0.37
1.7
77.93
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024974
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020449
6969101 - 6970496
1396