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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_698747_700715_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
698747 - 700715
Intron Length:
1969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTGTCTATAAAT
Flanking Amino Acid:
EFNFPDPYSKVKQKENGIAL
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
85.7
0.8
0.8
79.8
32.3
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
63.8
0.51
1.7
82.18
39

Associated Gene:

Gene:
PANK4
Ensembl Gene ID:
ENSAPLG00000008017
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008369
691014 - 714768
23755
ENSAPLT00000029018
691942 - 714768
22827
ENSAPLT00000023110
691502 - 714768
23267