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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6987810_6990520_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6987810 - 6990520
Intron Length:
2711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
GGAAATACTGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGGAAAT
U12 Branch Point Sequence:
GGGACTGGAAAT
Flanking Amino Acid:
NIPRGTEDSNGSGSGLCLVL
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
72.6
38.9
Major BPS
52
0.05
1.3
59
44.6
Major PPT
44.4
-0.3
1.7
40.6
43.3
Minor 5ss
29.4
-2.4
3.2
40.9
45.4
Minor BPS
40.2
-0.6
2
52.53
41.8

Associated Gene:

Gene:
IGSF21
Ensembl Gene ID:
ENSAPLG00000002491
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002516
6987652 - 6993941
6290