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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6991050_6992150_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6991050 - 6992150
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
TGTCCCTTTTTT
Flanking Amino Acid:
SMPMQSEVTLVAPKGPKITM
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
67.1
38.4
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
92.2
0.95
0.7
88.3
28.9
Minor 5ss
30
-2.3
3.5
39.6
45.9
Minor BPS
43.1
-0.4
3.6
74.38
42.3

Associated Gene:

Gene:
IGSF21
Ensembl Gene ID:
ENSAPLG00000002491
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002516
6987652 - 6993941
6290