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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6992934_6993478_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6992934 - 6993478
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATCCCTGACGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GCATCCCTGACG
Flanking Amino Acid:
ASGNIFLNVMAPPTSISVIA
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.1
34.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
63.6
0.31
1
57.8
36.9
Minor 5ss
27.1
-2.6
2.9
24.2
36.8
Minor BPS
53.3
-0
1.8
57.18
44

Associated Gene:

Gene:
IGSF21
Ensembl Gene ID:
ENSAPLG00000002491
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002516
6987652 - 6993941
6290