About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6993617_6993817_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6993617 - 6993817
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAT|GCCATTACT
5'SS Class:
major
3'SS Sequence:
GGCTGGCAGTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGTGGAT
U12 Branch Point Sequence:
ATGGGGTCAGCC
Flanking Amino Acid:
LPPVCFSFHEFPSLLPSLPE
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.2
0.24
1.4
73.5
36.8
Major BPS
47.6
-0.1
1.5
46.5
47
Major PPT
41.6
-0.4
1.7
39.2
44
Minor 5ss
26
-2.8
3.7
40.4
38
Minor BPS
34.5
-1.1
2.4
44.4
43.9

Associated Gene:

Gene:
IGSF21
Ensembl Gene ID:
ENSAPLG00000002491
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002516
6987652 - 6993941
6290