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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_700804_701320_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
700804 - 701320
Intron Length:
517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TCCCTTTTTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTGAT
U12 Branch Point Sequence:
CCCTTTTTAAAG
Flanking Amino Acid:
NKLQTLRQQPFAYGTLTVRS
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
74.4
34.2
Major BPS
72.4
0.56
1.1
63.1
44.4
Major PPT
75.8
0.58
1
77.1
29.1
Minor 5ss
39.8
-1.1
3.4
58.5
40.5
Minor BPS
52.5
-0
1.5
50.95
44.1

Associated Gene:

Gene:
PANK4
Ensembl Gene ID:
ENSAPLG00000008017
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023110
691502 - 714768
23267
ENSAPLT00000008369
691014 - 714768
23755
ENSAPLT00000029018
691942 - 714768
22827