About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_701434_701577_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
701434 - 701577
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAATGTC
5'SS Class:
major
3'SS Sequence:
TCTTCTCTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TCTTCTCTACCA
Flanking Amino Acid:
LTCFEEALDGVAKRAAASQP
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
73
36.9
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
80.4
0.68
0.8
74.2
35.2
Minor 5ss
36.2
-1.6
3.4
43.7
44.2
Minor BPS
55.4
0.17
2
71.45
41.1

Associated Gene:

Gene:
PANK4
Ensembl Gene ID:
ENSAPLG00000008017
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008369
691014 - 714768
23755
ENSAPLT00000029018
691942 - 714768
22827
ENSAPLT00000023110
691502 - 714768
23267