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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_70422_75265_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70422 - 75265
Intron Length:
4844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGCTC
5'SS Class:
major
3'SS Sequence:
TTTTTATGTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTACTTAACT
Flanking Amino Acid:
SPALGSTKEFRRTRSLHGPC
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
68
43.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.4
0.77
0.9
77.7
40.6
Minor 5ss
34.2
-1.8
3.6
50.1
46.4
Minor BPS
83
1.11
1.3
94.79
31.4

Associated Gene:

Gene:
NADK
Ensembl Gene ID:
ENSAPLG00000011328
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011820
61340 - 75438
14099