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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_709057_711105_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
709057 - 711105
Intron Length:
2049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTTATTATAAGG
Flanking Amino Acid:
KDLIEKKLGLKVDKEDVMTC
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
84.6
0.78
0.7
81.7
23.3
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
45.6
-0.4
1.9
53.12
41.8

Associated Gene:

Gene:
PANK4
Ensembl Gene ID:
ENSAPLG00000008017
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029018
691942 - 714768
22827
ENSAPLT00000023110
691502 - 714768
23267
ENSAPLT00000008369
691014 - 714768
23755