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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7092684_7093954_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7092684 - 7093954
Intron Length:
1271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCTCT
5'SS Class:
major
3'SS Sequence:
CCCCTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCTTGCTCACCC
Flanking Amino Acid:
IATRTTFVLPGQKHVRVTSL
Intron Amino Acid Position:
1101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
68.4
39.3
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
81.8
0.72
0.7
79.6
25.9
Minor 5ss
39.6
-1.2
3.3
56.2
48.2
Minor BPS
45.7
-0.3
2.2
57.89
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016051
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016782
7091587 - 7111002
19416
ENSAPLT00000047626
7091587 - 7109574
17988
ENSAPLT00000047135
7091587 - 7109574
17988