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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7096423_7098156_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7096423 - 7098156
Intron Length:
1734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGAAA
5'SS Class:
major
3'SS Sequence:
TGCTCTGCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TTCCTCTCACCC
Flanking Amino Acid:
GTVAAYPRNNGGLWDLAERP
Intron Amino Acid Position:
994

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
71.3
35.7
Major BPS
72.7
0.56
1
75
30.1
Major PPT
65.9
0.36
0.9
57.9
38.5
Minor 5ss
26.6
-2.7
3
31.2
42.7
Minor BPS
49.3
-0
1.8
63.43
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016051
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047626
7091587 - 7109574
17988
ENSAPLT00000047135
7091587 - 7109574
17988
ENSAPLT00000016782
7091587 - 7111002
19416