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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7098312_7098490_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7098312 - 7098490
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTTTTCCCACCA
Flanking Amino Acid:
PTVCLGLQDGSIAVYGSVDT
Intron Amino Acid Position:
942

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
77.9
0.63
0.8
71.3
34.5
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
46.2
-0.2
2.1
63.62
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016051
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047626
7091587 - 7109574
17988
ENSAPLT00000047135
7091587 - 7109574
17988
ENSAPLT00000016782
7091587 - 7111002
19416