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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7098904_7099172_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7098904 - 7099172
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGCG
5'SS Class:
major
3'SS Sequence:
GTGTCTCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATAAAT
U12 Branch Point Sequence:
TGTGCATGAGCT
Flanking Amino Acid:
AFSSKALDLQLGAAVHNPVQ
Intron Amino Acid Position:
837

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
63.8
40.7
Major BPS
56.8
0.17
1.2
65.3
38.6
Major PPT
76.7
0.6
0.9
70.1
36.4
Minor 5ss
28.9
-2.4
3.5
38.5
46.7
Minor BPS
47.7
-0.1
2
71.31
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016051
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047135
7091587 - 7109574
17988
ENSAPLT00000016782
7091587 - 7111002
19416
ENSAPLT00000047626
7091587 - 7109574
17988