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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7099295_7100193_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7099295 - 7100193
Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
TGCTCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCGAAC
U12 Branch Point Sequence:
CATCCTCGAACT
Flanking Amino Acid:
NRLHLAKIGLREENQPGWLC
Intron Amino Acid Position:
796

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.3
65
42.7
Major BPS
48.9
-0
1.3
59
36
Major PPT
71.4
0.48
0.8
62.1
34.7
Minor 5ss
30.6
-2.2
2.6
28.8
36.1
Minor BPS
49
0
1.8
68.53
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016051
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047626
7091587 - 7109574
17988
ENSAPLT00000047135
7091587 - 7109574
17988
ENSAPLT00000016782
7091587 - 7111002
19416