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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7100509_7100716_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7100509 - 7100716
Intron Length:
208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTAAA
5'SS Class:
major
3'SS Sequence:
TCACTTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTTCCCTGAATT
Flanking Amino Acid:
LISTLHGTYQNLNMTVAQDW
Intron Amino Acid Position:
720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
74.3
38
Major BPS
85
0.87
0.8
85.6
23
Major PPT
73.8
0.54
0.8
65.7
35.8
Minor 5ss
39.5
-1.2
2.9
51
45.5
Minor BPS
69.6
0.69
1.4
82.5
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016051
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047626
7091587 - 7109574
17988
ENSAPLT00000047135
7091587 - 7109574
17988
ENSAPLT00000016782
7091587 - 7111002
19416