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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7101120_7101667_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7101120 - 7101667
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGTGCC
5'SS Class:
major
3'SS Sequence:
CCTCCCTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAC
U12 Branch Point Sequence:
TGCCCATTTACT
Flanking Amino Acid:
DMLVCANINFKGQLEISSLV
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
69.4
36.8
Major BPS
66.4
0.41
1
59
37.6
Major PPT
72.1
0.5
0.9
68.2
31.9
Minor 5ss
34.6
-1.8
3.4
44.5
37.4
Minor BPS
51.8
0.14
2
72.12
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016051
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047135
7091587 - 7109574
17988