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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7101814_7102495_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7101814 - 7102495
Intron Length:
682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTCCT
5'SS Class:
major
3'SS Sequence:
ATCCCCTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTCCAT
U12 Branch Point Sequence:
CCCGCTCCATCC
Flanking Amino Acid:
SISDRSSLNKLLSSGQRQLL
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
69.2
41.2
Major BPS
48.8
-0
1.5
60.4
45.8
Major PPT
76.4
0.59
0.8
69.7
30.3
Minor 5ss
39.3
-1.2
2.7
52
44.5
Minor BPS
36.5
-1
1.9
38.02
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016051
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047626
7091587 - 7109574
17988
ENSAPLT00000047135
7091587 - 7109574
17988
ENSAPLT00000016782
7091587 - 7111002
19416