About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7102670_7102942_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7102670 - 7102942
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTCAC
U12 Branch Point Sequence:
CTGGTGTCACCC
Flanking Amino Acid:
RFPQFILLLQDMLKNTPKGH
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
68
43.2
Major BPS
57.2
0.18
1.4
63.1
44.5
Major PPT
81.3
0.7
0.7
73.7
31.3
Minor 5ss
31.8
-2.1
3.8
46
49.3
Minor BPS
37.3
-0.9
2.3
44.88
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016051
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047626
7091587 - 7109574
17988
ENSAPLT00000047135
7091587 - 7109574
17988
ENSAPLT00000016782
7091587 - 7111002
19416