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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7103245_7103435_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7103245 - 7103435
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGGAGGG
5'SS Class:
major
3'SS Sequence:
CCCCCGTGCCAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
TGACACTTATCC
Flanking Amino Acid:
EKIGDLFVASFSKSMVLDVY
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
52
45.3
Major BPS
71.3
0.53
1
61.3
37
Major PPT
49.7
-0
1.1
46.5
34.3
Minor 5ss
28.9
-2.4
3.5
38.1
46.8
Minor BPS
51.3
0.02
1.8
63.19
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016051
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047626
7091587 - 7109574
17988
ENSAPLT00000047135
7091587 - 7109574
17988
ENSAPLT00000016782
7091587 - 7111002
19416