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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7103765_7103940_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7103765 - 7103940
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
GCGTGCCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTTAT
U12 Branch Point Sequence:
CATCAGTTATCT
Flanking Amino Acid:
PMPAGLSPQQVVRRHILGSI
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
61.2
0.28
1.2
53
42.8
Major PPT
70.9
0.47
1
65.7
41
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
43.7
-0.3
2.4
63.61
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016051
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047626
7091587 - 7109574
17988
ENSAPLT00000047135
7091587 - 7109574
17988
ENSAPLT00000016782
7091587 - 7111002
19416