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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7104048_7105646_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7104048 - 7105646
Intron Length:
1599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTTTTTGGTG
Flanking Amino Acid:
VTFLHRKEAPGDSEEEDTGF
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
85.4
0.8
0.7
80.7
24.4
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
44
-0.6
3.4
64.84
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016051
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047626
7091587 - 7109574
17988
ENSAPLT00000047135
7091587 - 7109574
17988
ENSAPLT00000016782
7091587 - 7111002
19416