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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7105756_7106670_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7105756 - 7106670
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTCC
5'SS Class:
major
3'SS Sequence:
GCCCCCTGCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAG
U12 Branch Point Sequence:
CGATCTCCAGCG
Flanking Amino Acid:
QELKQKYDWKMTQLMKAAKS
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
60.5
39.3
Major BPS
46.3
-0.2
1.7
60.4
45.8
Major PPT
61.7
0.26
0.9
52.7
36.7
Minor 5ss
37
-1.5
3.4
51.5
45.2
Minor BPS
40.1
-0.8
2
42.08
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016051
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016782
7091587 - 7111002
19416