Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7106788_7107221_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7106788 - 7107221

Intron Length:

434

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGCTG

5'SS Class:

strong_major

3'SS Sequence:

GCTTGGGGCTCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCTCCT

U12 Branch Point Sequence:

TTCTCCTCCCGC

Flanking Amino Acid:

AKQRASFQPKLSPDLNRLKE

Intron Amino Acid Position:

241

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

37.5

-0.7

4.3

79.6

35.6

Major PPT

57.5

0.17

1.1

53.1

45.9

Minor 5ss

34.4

-1.8

3.4

46.7

48.6

Minor BPS

34.8

-1.1

3.7

57.93

47.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016051

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016782

7091587 - 7111002

19416