About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7107963_7108984_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7107963 - 7108984
Intron Length:
1022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
ACCCTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTTTTTCACCC
Flanking Amino Acid:
IEGLVLETQEGLPAGVSNGE
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
67.1
44.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.1
0.52
0.8
65.8
29.5
Minor 5ss
31.6
-2.1
3.1
31.9
42.5
Minor BPS
51.7
0.03
1.8
66.57
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016051
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047135
7091587 - 7109574
17988
ENSAPLT00000016782
7091587 - 7111002
19416
ENSAPLT00000047626
7091587 - 7109574
17988