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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7109623_7110924_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7109623 - 7110924
Intron Length:
1302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGAG
5'SS Class:
major
3'SS Sequence:
TTCCTTCCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CCTCTCTGATCC
Flanking Amino Acid:
STVVVAWRAQERLGDGPRQS
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1.3
72.3
39.5
Major BPS
79
0.72
1
69
38.9
Major PPT
81.2
0.7
0.7
76.8
25.2
Minor 5ss
27.4
-2.6
2.9
31.5
42.8
Minor BPS
47.5
-0.2
1.7
55.92
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016051
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016782
7091587 - 7111002
19416