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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_712153_714647_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
712153 - 714647
Intron Length:
2495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAACCGCG
5'SS Class:
major
3'SS Sequence:
ATCTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
ATCTTTTTAACA
Flanking Amino Acid:
ENAKRFAIDIGGSLTKLAYY
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.4
0.34
1.3
51.9
45.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
80.6
0.69
0.9
77.1
35.2
Minor 5ss
42.7
-0.8
3.2
57.3
47
Minor BPS
75
0.78
1.1
76.76
34.5

Associated Gene:

Gene:
PANK4
Ensembl Gene ID:
ENSAPLG00000008017
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029018
691942 - 714768
22827
ENSAPLT00000023110
691502 - 714768
23267
ENSAPLT00000008369
691014 - 714768
23755