About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7132685_7132799_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7132685 - 7132799
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
GCGTCCTCACCT
Flanking Amino Acid:
IGRKEVPKQQVAYRNLGQNL
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.5
38.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
82.1
0.72
0.7
74.2
30.9
Minor 5ss
30.3
-2.3
3.3
38
46.8
Minor BPS
52.8
0.17
1.9
68.77
47.7

Associated Gene:

Gene:
RCC2
Ensembl Gene ID:
ENSAPLG00000015981
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016686
7132567 - 7137247
4681