About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7132944_7133077_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7132944 - 7133077
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCCAA
5'SS Class:
major
3'SS Sequence:
TCGTTCCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACCCAC
U12 Branch Point Sequence:
CAGCCCCCAACC
Flanking Amino Acid:
ITAEGKLWSWGRNEKGQLGH
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
61.1
41.3
Major BPS
48.3
-0.1
1.1
56.1
31
Major PPT
69.7
0.44
1
70
36.6
Minor 5ss
31.3
-2.1
3
30.1
43
Minor BPS
46.4
-0.2
1.9
54.44
42.9

Associated Gene:

Gene:
RCC2
Ensembl Gene ID:
ENSAPLG00000015981
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016686
7132567 - 7137247
4681