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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7133388_7133830_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7133388 - 7133830
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCCG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTTCTTGACT
Flanking Amino Acid:
QTDAVPSPTQIMYNGQPITK
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
68.7
42.2
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
89
0.88
0.6
84.5
23.3
Minor 5ss
33.9
-1.8
2.9
42.1
44.5
Minor BPS
87.9
1.28
0.8
98.86
22.7

Associated Gene:

Gene:
RCC2
Ensembl Gene ID:
ENSAPLG00000015981
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016686
7132567 - 7137247
4681