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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7133946_7134162_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7133946 - 7134162
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACGGTAA
5'SS Class:
major
3'SS Sequence:
TGCTCCCGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
GGCTTTGTAACG
Flanking Amino Acid:
SFGCPEYGQLGHNSDGKFIA
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
63
40
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
67
0.38
0.9
60.7
35.3
Minor 5ss
34.5
-1.8
3.4
37.2
47.4
Minor BPS
47.3
-0.3
2
51.7
43.2

Associated Gene:

Gene:
RCC2
Ensembl Gene ID:
ENSAPLG00000015981
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016686
7132567 - 7137247
4681