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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7134330_7135122_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7134330 - 7135122
Intron Length:
793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
CCTCTGTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
CCCGGCTCACCA
Flanking Amino Acid:
RDVACGANHTLVLDSQKRVF
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
60.8
45.3
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
73.3
0.52
0.8
64.5
36.5
Minor 5ss
26.7
-2.7
3
31.4
42.5
Minor BPS
38.7
-0.8
2.1
42.11
45.8

Associated Gene:

Gene:
RCC2
Ensembl Gene ID:
ENSAPLG00000015981
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016686
7132567 - 7137247
4681