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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7135534_7135632_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7135534 - 7135632
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ACTTCACTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
TTGCACTTCACT
Flanking Amino Acid:
CGWKIRSLACGKSSIIVAAD
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.5
32.9
Major BPS
68.7
0.46
1
71.3
34
Major PPT
73.5
0.53
0.8
67.1
33.6
Minor 5ss
28.5
-2.5
3.2
31.7
42.6
Minor BPS
57.3
0.31
2
78.54
43.3

Associated Gene:

Gene:
RCC2
Ensembl Gene ID:
ENSAPLG00000015981
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016686
7132567 - 7137247
4681