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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7139152_7139243_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7139152 - 7139243
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACACAA
5'SS Class:
major
3'SS Sequence:
CATCCATCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATCCAT
U12 Branch Point Sequence:
CATCCATCCATC
Flanking Amino Acid:
AHANAFFPDMVNMLVLGRHL
Intron Amino Acid Position:
746

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.2
60.5
40.1
Major BPS
57.2
0.18
1.3
68.1
38
Major PPT
69.1
0.43
0.9
62.2
33.2
Minor 5ss
37
-1.5
3.1
44.6
44.3
Minor BPS
41.4
-0.6
2.1
50.54
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015957
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016664
7138918 - 7144491
5574