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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7139373_7139656_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7139373 - 7139656
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCCCGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCGAC
U12 Branch Point Sequence:
CCCTCCCGACCC
Flanking Amino Acid:
ALRKFNSYVQNCISWNRDIL
Intron Amino Acid Position:
703

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
48.5
-0
1.3
46
38.7
Major PPT
70.1
0.45
0.9
65.7
30.3
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
43.6
-0.5
2
51.3
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015957
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016664
7138918 - 7144491
5574