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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7139921_7140007_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7139921 - 7140007
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCAGC
5'SS Class:
major
3'SS Sequence:
TCTCCATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAC
U12 Branch Point Sequence:
CTGCCCCCAAAT
Flanking Amino Acid:
LSFVPAPDRKGFRLLLASPS
Intron Amino Acid Position:
645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
63.1
43.4
Major BPS
61.7
0.29
1
63.7
32.3
Major PPT
74.5
0.55
0.8
65.8
34.8
Minor 5ss
32.9
-2
3.1
42.5
44.6
Minor BPS
45.9
-0.2
2
64.11
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015957
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016664
7138918 - 7144491
5574