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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7140153_7140224_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7140153 - 7140224
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCACCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
TGCCCCTCACCC
Flanking Amino Acid:
GRILIGSSFPRFGGRRMARA
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
69
0.43
0.9
58.8
38
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
49.3
-0
1.9
61.1
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015957
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016664
7138918 - 7144491
5574