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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7140830_7140915_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7140830 - 7140915
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
GCTGCCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTCCAC
U12 Branch Point Sequence:
CTCTTCTCCGCT
Flanking Amino Acid:
LENRNDRWIQDEVEFGYVQA
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
44.9
-0.3
1.4
52.1
43.1
Major PPT
68.8
0.42
0.9
61.5
34.9
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
36.6
-0.9
3.5
63.07
47.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015957
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016664
7138918 - 7144491
5574