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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7141851_7141936_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7141851 - 7141936
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACCGCCG
5'SS Class:
weak_major
3'SS Sequence:
GCTGTCACCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TCCTCCCCAATT
Flanking Amino Acid:
NSDTAVRSYEDLKDMSQMVL
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.6
0.09
1.3
39.9
46
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
61.3
0.25
0.9
51.8
38
Minor 5ss
35.1
-1.7
3.4
39.4
46
Minor BPS
53.7
0.19
1.9
72.68
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015957
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016664
7138918 - 7144491
5574