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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7142192_7142267_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7142192 - 7142267
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAGCAT
U12 Branch Point Sequence:
GCCCCGATGAGC
Flanking Amino Acid:
GRAMLYLTCVDISLDADTSR
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
69.7
43.7
Major BPS
49.2
-0
1.5
59.7
46.7
Major PPT
72
0.5
0.8
65.4
30.4
Minor 5ss
39.2
-1.2
2.8
41
45.3
Minor BPS
36.3
-1.1
2.3
40.56
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015957
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016664
7138918 - 7144491
5574